#================================================== #All numbers are READ count #================================================== Total records: 114762312 QC failed: 0 Optical/PCR duplicate: 71657136 Non primary hits 8468622 Unmapped reads: 4721272 mapq < mapq_cut (non-unique): 1406449 mapq >= mapq_cut (unique): 28508833 Read-1: 14255587 Read-2: 14253246 Reads map to '+': 14254440 Reads map to '-': 14254393 Non-splice reads: 21422793 Splice reads: 7086040 Reads mapped in proper pairs: 28501598 Proper-paired reads map to different chrom:0