#================================================== #All numbers are READ count #================================================== Total records: 72212257 QC failed: 0 Optical/PCR duplicate: 31541623 Non primary hits 3738161 Unmapped reads: 6618840 mapq < mapq_cut (non-unique): 1243842 mapq >= mapq_cut (unique): 29069791 Read-1: 14537088 Read-2: 14532703 Reads map to '+': 14534864 Reads map to '-': 14534927 Non-splice reads: 21028723 Splice reads: 8041068 Reads mapped in proper pairs: 29061788 Proper-paired reads map to different chrom:0