#================================================== #All numbers are READ count #================================================== Total records: 86226674 QC failed: 0 Optical/PCR duplicate: 45564077 Non primary hits 4059494 Unmapped reads: 2390252 mapq < mapq_cut (non-unique): 1277716 mapq >= mapq_cut (unique): 32935135 Read-1: 16468316 Read-2: 16466819 Reads map to '+': 16467573 Reads map to '-': 16467562 Non-splice reads: 22368851 Splice reads: 10566284 Reads mapped in proper pairs: 32931936 Proper-paired reads map to different chrom:0