#================================================== #All numbers are READ count #================================================== Total records: 105600648 QC failed: 0 Optical/PCR duplicate: 31350457 Non primary hits 8633996 Unmapped reads: 4694751 mapq < mapq_cut (non-unique): 2675539 mapq >= mapq_cut (unique): 58245905 Read-1: 29131635 Read-2: 29114270 Reads map to '+': 29122836 Reads map to '-': 29123069 Non-splice reads: 40177269 Splice reads: 18068636 Reads mapped in proper pairs: 58224312 Proper-paired reads map to different chrom:0