#================================================== #All numbers are READ count #================================================== Total records: 113472229 QC failed: 0 Optical/PCR duplicate: 40965881 Non primary hits 7539655 Unmapped reads: 5527373 mapq < mapq_cut (non-unique): 2378871 mapq >= mapq_cut (unique): 57060449 Read-1: 28532886 Read-2: 28527563 Reads map to '+': 28530110 Reads map to '-': 28530339 Non-splice reads: 41449642 Splice reads: 15610807 Reads mapped in proper pairs: 57044680 Proper-paired reads map to different chrom:0