#================================================== #All numbers are READ count #================================================== Total records: 123649760 QC failed: 0 Optical/PCR duplicate: 58096157 Non primary hits 9590500 Unmapped reads: 1266567 mapq < mapq_cut (non-unique): 2476730 mapq >= mapq_cut (unique): 52219806 Read-1: 26110832 Read-2: 26108974 Reads map to '+': 26109905 Reads map to '-': 26109901 Non-splice reads: 35943425 Splice reads: 16276381 Reads mapped in proper pairs: 52215854 Proper-paired reads map to different chrom:0