#================================================== #All numbers are READ count #================================================== Total records: 104093149 QC failed: 0 Optical/PCR duplicate: 42685789 Non primary hits 6059195 Unmapped reads: 2363440 mapq < mapq_cut (non-unique): 2204493 mapq >= mapq_cut (unique): 50780232 Read-1: 25391509 Read-2: 25388723 Reads map to '+': 25390078 Reads map to '-': 25390154 Non-splice reads: 35040438 Splice reads: 15739794 Reads mapped in proper pairs: 50774668 Proper-paired reads map to different chrom:0