#================================================== #All numbers are READ count #================================================== Total records: 101282467 QC failed: 0 Optical/PCR duplicate: 54820443 Non primary hits 7358215 Unmapped reads: 3522613 mapq < mapq_cut (non-unique): 1728679 mapq >= mapq_cut (unique): 33852517 Read-1: 16927268 Read-2: 16925249 Reads map to '+': 16926274 Reads map to '-': 16926243 Non-splice reads: 24834956 Splice reads: 9017561 Reads mapped in proper pairs: 33847004 Proper-paired reads map to different chrom:0