#================================================== #All numbers are READ count #================================================== Total records: 89963976 QC failed: 0 Optical/PCR duplicate: 37929386 Non primary hits 3990394 Unmapped reads: 5885935 mapq < mapq_cut (non-unique): 1598078 mapq >= mapq_cut (unique): 40560183 Read-1: 20282087 Read-2: 20278096 Reads map to '+': 20280074 Reads map to '-': 20280109 Non-splice reads: 27952145 Splice reads: 12608038 Reads mapped in proper pairs: 40553622 Proper-paired reads map to different chrom:0