#================================================== #All numbers are READ count #================================================== Total records: 61215599 QC failed: 0 Optical/PCR duplicate: 23573555 Non primary hits 3693035 Unmapped reads: 1250291 mapq < mapq_cut (non-unique): 1329971 mapq >= mapq_cut (unique): 31368747 Read-1: 15685753 Read-2: 15682994 Reads map to '+': 15684339 Reads map to '-': 15684408 Non-splice reads: 22297818 Splice reads: 9070929 Reads mapped in proper pairs: 31364418 Proper-paired reads map to different chrom:0