#================================================== #All numbers are READ count #================================================== Total records: 73500611 QC failed: 0 Optical/PCR duplicate: 25442670 Non primary hits 4444993 Unmapped reads: 5614372 mapq < mapq_cut (non-unique): 1675306 mapq >= mapq_cut (unique): 36323270 Read-1: 18164640 Read-2: 18158630 Reads map to '+': 18161682 Reads map to '-': 18161588 Non-splice reads: 24656220 Splice reads: 11667050 Reads mapped in proper pairs: 36312592 Proper-paired reads map to different chrom:0