#================================================== #All numbers are READ count #================================================== Total records: 169880931 QC failed: 0 Optical/PCR duplicate: 108650473 Non primary hits 11640637 Unmapped reads: 3611796 mapq < mapq_cut (non-unique): 2162999 mapq >= mapq_cut (unique): 43815026 Read-1: 21908647 Read-2: 21906379 Reads map to '+': 21907522 Reads map to '-': 21907504 Non-splice reads: 29830421 Splice reads: 13984605 Reads mapped in proper pairs: 43810542 Proper-paired reads map to different chrom:0