#================================================== #All numbers are READ count #================================================== Total records: 60763103 QC failed: 0 Optical/PCR duplicate: 37149511 Non primary hits 3418509 Unmapped reads: 2233346 mapq < mapq_cut (non-unique): 789042 mapq >= mapq_cut (unique): 17172695 Read-1: 8587055 Read-2: 8585640 Reads map to '+': 8586353 Reads map to '-': 8586342 Non-splice reads: 12353249 Splice reads: 4819446 Reads mapped in proper pairs: 17169978 Proper-paired reads map to different chrom:0