#================================================== #All numbers are READ count #================================================== Total records: 80760312 QC failed: 0 Optical/PCR duplicate: 29406515 Non primary hits 4582900 Unmapped reads: 1455100 mapq < mapq_cut (non-unique): 1821110 mapq >= mapq_cut (unique): 43494687 Read-1: 21748983 Read-2: 21745704 Reads map to '+': 21747381 Reads map to '-': 21747306 Non-splice reads: 29677442 Splice reads: 13817245 Reads mapped in proper pairs: 43488854 Proper-paired reads map to different chrom:0