#================================================== #All numbers are READ count #================================================== Total records: 81273435 QC failed: 0 Optical/PCR duplicate: 28659656 Non primary hits 4838597 Unmapped reads: 2044763 mapq < mapq_cut (non-unique): 1876369 mapq >= mapq_cut (unique): 43854050 Read-1: 21928599 Read-2: 21925451 Reads map to '+': 21927002 Reads map to '-': 21927048 Non-splice reads: 30396227 Splice reads: 13457823 Reads mapped in proper pairs: 43848494 Proper-paired reads map to different chrom:0