#================================================== #All numbers are READ count #================================================== Total records: 46090600 QC failed: 0 Optical/PCR duplicate: 19084397 Non primary hits 3398586 Unmapped reads: 1762095 mapq < mapq_cut (non-unique): 1004735 mapq >= mapq_cut (unique): 20840787 Read-1: 10421249 Read-2: 10419538 Reads map to '+': 10420404 Reads map to '-': 10420383 Non-splice reads: 15643387 Splice reads: 5197400 Reads mapped in proper pairs: 20835688 Proper-paired reads map to different chrom:0