#================================================== #All numbers are READ count #================================================== Total records: 77386194 QC failed: 0 Optical/PCR duplicate: 24386750 Non primary hits 4548608 Unmapped reads: 1912663 mapq < mapq_cut (non-unique): 1817267 mapq >= mapq_cut (unique): 44720906 Read-1: 22362490 Read-2: 22358416 Reads map to '+': 22360386 Reads map to '-': 22360520 Non-splice reads: 31124930 Splice reads: 13595976 Reads mapped in proper pairs: 44713366 Proper-paired reads map to different chrom:0