#================================================== #All numbers are READ count #================================================== Total records: 88325478 QC failed: 0 Optical/PCR duplicate: 32296440 Non primary hits 4921968 Unmapped reads: 3188711 mapq < mapq_cut (non-unique): 2000611 mapq >= mapq_cut (unique): 45917748 Read-1: 22960806 Read-2: 22956942 Reads map to '+': 22958937 Reads map to '-': 22958811 Non-splice reads: 31681113 Splice reads: 14236635 Reads mapped in proper pairs: 45910902 Proper-paired reads map to different chrom:0