#================================================== #All numbers are READ count #================================================== Total records: 90895971 QC failed: 0 Optical/PCR duplicate: 35235505 Non primary hits 6124511 Unmapped reads: 2354474 mapq < mapq_cut (non-unique): 1994248 mapq >= mapq_cut (unique): 45187233 Read-1: 22595830 Read-2: 22591403 Reads map to '+': 22593606 Reads map to '-': 22593627 Non-splice reads: 31287541 Splice reads: 13899692 Reads mapped in proper pairs: 45180508 Proper-paired reads map to different chrom:0