#================================================== #All numbers are READ count #================================================== Total records: 115880714 QC failed: 0 Optical/PCR duplicate: 52505900 Non primary hits 6683720 Unmapped reads: 11984909 mapq < mapq_cut (non-unique): 1907960 mapq >= mapq_cut (unique): 42798225 Read-1: 21401920 Read-2: 21396305 Reads map to '+': 21399031 Reads map to '-': 21399194 Non-splice reads: 30783955 Splice reads: 12014270 Reads mapped in proper pairs: 42787954 Proper-paired reads map to different chrom:0