#================================================== #All numbers are READ count #================================================== Total records: 162446763 QC failed: 0 Optical/PCR duplicate: 70601133 Non primary hits 8053631 Unmapped reads: 15621688 mapq < mapq_cut (non-unique): 2706872 mapq >= mapq_cut (unique): 65463439 Read-1: 32740153 Read-2: 32723286 Reads map to '+': 32731615 Reads map to '-': 32731824 Non-splice reads: 44198975 Splice reads: 21264464 Reads mapped in proper pairs: 65441792 Proper-paired reads map to different chrom:0