#================================================== #All numbers are READ count #================================================== Total records: 62018585 QC failed: 0 Optical/PCR duplicate: 20831435 Non primary hits 3417449 Unmapped reads: 3010313 mapq < mapq_cut (non-unique): 1364032 mapq >= mapq_cut (unique): 33395356 Read-1: 16699348 Read-2: 16696008 Reads map to '+': 16697679 Reads map to '-': 16697677 Non-splice reads: 23340821 Splice reads: 10054535 Reads mapped in proper pairs: 33390496 Proper-paired reads map to different chrom:0