#================================================== #All numbers are READ count #================================================== Total records: 107568811 QC failed: 0 Optical/PCR duplicate: 39512982 Non primary hits 6894351 Unmapped reads: 5377254 mapq < mapq_cut (non-unique): 2505276 mapq >= mapq_cut (unique): 53278948 Read-1: 26642580 Read-2: 26636368 Reads map to '+': 26639412 Reads map to '-': 26639536 Non-splice reads: 37112746 Splice reads: 16166202 Reads mapped in proper pairs: 53266198 Proper-paired reads map to different chrom:0