#================================================== #All numbers are READ count #================================================== Total records: 86026243 QC failed: 0 Optical/PCR duplicate: 34191186 Non primary hits 4286401 Unmapped reads: 3915797 mapq < mapq_cut (non-unique): 1724120 mapq >= mapq_cut (unique): 41908739 Read-1: 20956514 Read-2: 20952225 Reads map to '+': 20954342 Reads map to '-': 20954397 Non-splice reads: 28377441 Splice reads: 13531298 Reads mapped in proper pairs: 41902138 Proper-paired reads map to different chrom:0