#================================================== #All numbers are READ count #================================================== Total records: 76672036 QC failed: 0 Optical/PCR duplicate: 25538340 Non primary hits 3762194 Unmapped reads: 2047928 mapq < mapq_cut (non-unique): 1653730 mapq >= mapq_cut (unique): 43669844 Read-1: 21837310 Read-2: 21832534 Reads map to '+': 21834917 Reads map to '-': 21834927 Non-splice reads: 31608341 Splice reads: 12061503 Reads mapped in proper pairs: 43662272 Proper-paired reads map to different chrom:0