#================================================== #All numbers are READ count #================================================== Total records: 92050136 QC failed: 0 Optical/PCR duplicate: 39785124 Non primary hits 4716196 Unmapped reads: 6272243 mapq < mapq_cut (non-unique): 1687245 mapq >= mapq_cut (unique): 39589328 Read-1: 19798006 Read-2: 19791322 Reads map to '+': 19794615 Reads map to '-': 19794713 Non-splice reads: 27934749 Splice reads: 11654579 Reads mapped in proper pairs: 39579006 Proper-paired reads map to different chrom:0