#================================================== #All numbers are READ count #================================================== Total records: 97458518 QC failed: 0 Optical/PCR duplicate: 46816563 Non primary hits 6367636 Unmapped reads: 1449497 mapq < mapq_cut (non-unique): 2014996 mapq >= mapq_cut (unique): 40809826 Read-1: 20408584 Read-2: 20401242 Reads map to '+': 20404987 Reads map to '-': 20404839 Non-splice reads: 27060971 Splice reads: 13748855 Reads mapped in proper pairs: 40791998 Proper-paired reads map to different chrom:0