#================================================== #All numbers are READ count #================================================== Total records: 95900531 QC failed: 0 Optical/PCR duplicate: 74788234 Non primary hits 5447517 Unmapped reads: 690225 mapq < mapq_cut (non-unique): 750334 mapq >= mapq_cut (unique): 14224221 Read-1: 7113579 Read-2: 7110642 Reads map to '+': 7112132 Reads map to '-': 7112089 Non-splice reads: 9989270 Splice reads: 4234951 Reads mapped in proper pairs: 14218612 Proper-paired reads map to different chrom:0