#================================================== #All numbers are READ count #================================================== Total records: 83207303 QC failed: 0 Optical/PCR duplicate: 28534600 Non primary hits 5020501 Unmapped reads: 2432783 mapq < mapq_cut (non-unique): 1990833 mapq >= mapq_cut (unique): 45228586 Read-1: 22615999 Read-2: 22612587 Reads map to '+': 22614317 Reads map to '-': 22614269 Non-splice reads: 30418412 Splice reads: 14810174 Reads mapped in proper pairs: 45222344 Proper-paired reads map to different chrom:0