#================================================== #All numbers are READ count #================================================== Total records: 80556527 QC failed: 0 Optical/PCR duplicate: 25466651 Non primary hits 4097649 Unmapped reads: 3474061 mapq < mapq_cut (non-unique): 1776089 mapq >= mapq_cut (unique): 45742077 Read-1: 22873670 Read-2: 22868407 Reads map to '+': 22870981 Reads map to '-': 22871096 Non-splice reads: 32703867 Splice reads: 13038210 Reads mapped in proper pairs: 45733768 Proper-paired reads map to different chrom:0