#================================================== #All numbers are READ count #================================================== Total records: 97259422 QC failed: 0 Optical/PCR duplicate: 34289475 Non primary hits 5547802 Unmapped reads: 5791955 mapq < mapq_cut (non-unique): 2173905 mapq >= mapq_cut (unique): 49456285 Read-1: 24730883 Read-2: 24725402 Reads map to '+': 24728122 Reads map to '-': 24728163 Non-splice reads: 34702475 Splice reads: 14753810 Reads mapped in proper pairs: 49447716 Proper-paired reads map to different chrom:0