#================================================== #All numbers are READ count #================================================== Total records: 60474055 QC failed: 0 Optical/PCR duplicate: 21338014 Non primary hits 3652433 Unmapped reads: 881478 mapq < mapq_cut (non-unique): 1476126 mapq >= mapq_cut (unique): 33126004 Read-1: 16563743 Read-2: 16562261 Reads map to '+': 16562990 Reads map to '-': 16563014 Non-splice reads: 22618287 Splice reads: 10507717 Reads mapped in proper pairs: 33123058 Proper-paired reads map to different chrom:0