#================================================== #All numbers are READ count #================================================== Total records: 78097722 QC failed: 0 Optical/PCR duplicate: 26058746 Non primary hits 4367082 Unmapped reads: 3278352 mapq < mapq_cut (non-unique): 1688234 mapq >= mapq_cut (unique): 42705308 Read-1: 21354916 Read-2: 21350392 Reads map to '+': 21352581 Reads map to '-': 21352727 Non-splice reads: 30281507 Splice reads: 12423801 Reads mapped in proper pairs: 42697498 Proper-paired reads map to different chrom:0