#================================================== #All numbers are READ count #================================================== Total records: 67359977 QC failed: 0 Optical/PCR duplicate: 23481608 Non primary hits 3282771 Unmapped reads: 8007288 mapq < mapq_cut (non-unique): 1318418 mapq >= mapq_cut (unique): 31269892 Read-1: 15637755 Read-2: 15632137 Reads map to '+': 15634965 Reads map to '-': 15634927 Non-splice reads: 21357474 Splice reads: 9912418 Reads mapped in proper pairs: 31262310 Proper-paired reads map to different chrom:0