#================================================== #All numbers are READ count #================================================== Total records: 82310130 QC failed: 0 Optical/PCR duplicate: 33753397 Non primary hits 4991528 Unmapped reads: 1442106 mapq < mapq_cut (non-unique): 1703850 mapq >= mapq_cut (unique): 40419249 Read-1: 20210574 Read-2: 20208675 Reads map to '+': 20209556 Reads map to '-': 20209693 Non-splice reads: 28475000 Splice reads: 11944249 Reads mapped in proper pairs: 40414910 Proper-paired reads map to different chrom:0