#================================================== #All numbers are READ count #================================================== Total records: 172878694 QC failed: 0 Optical/PCR duplicate: 86055672 Non primary hits 11400498 Unmapped reads: 4940945 mapq < mapq_cut (non-unique): 2818731 mapq >= mapq_cut (unique): 67662848 Read-1: 33833314 Read-2: 33829534 Reads map to '+': 33831395 Reads map to '-': 33831453 Non-splice reads: 49993956 Splice reads: 17668892 Reads mapped in proper pairs: 67655304 Proper-paired reads map to different chrom:0