#================================================== #All numbers are READ count #================================================== Total records: 91885405 QC failed: 0 Optical/PCR duplicate: 33121814 Non primary hits 5346727 Unmapped reads: 2097226 mapq < mapq_cut (non-unique): 2002544 mapq >= mapq_cut (unique): 49317094 Read-1: 24660723 Read-2: 24656371 Reads map to '+': 24658552 Reads map to '-': 24658542 Non-splice reads: 34942381 Splice reads: 14374713 Reads mapped in proper pairs: 49307018 Proper-paired reads map to different chrom:0