#================================================== #All numbers are READ count #================================================== Total records: 108670822 QC failed: 0 Optical/PCR duplicate: 41694811 Non primary hits 5589840 Unmapped reads: 5523314 mapq < mapq_cut (non-unique): 2150237 mapq >= mapq_cut (unique): 53712620 Read-1: 26860016 Read-2: 26852604 Reads map to '+': 26856280 Reads map to '-': 26856340 Non-splice reads: 38131602 Splice reads: 15581018 Reads mapped in proper pairs: 53700916 Proper-paired reads map to different chrom:0