#================================================== #All numbers are READ count #================================================== Total records: 77182268 QC failed: 0 Optical/PCR duplicate: 35065593 Non primary hits 3466786 Unmapped reads: 6873351 mapq < mapq_cut (non-unique): 1195764 mapq >= mapq_cut (unique): 30580774 Read-1: 15292020 Read-2: 15288754 Reads map to '+': 15290359 Reads map to '-': 15290415 Non-splice reads: 22225827 Splice reads: 8354947 Reads mapped in proper pairs: 30575450 Proper-paired reads map to different chrom:0