#================================================== #All numbers are READ count #================================================== Total records: 66463450 QC failed: 0 Optical/PCR duplicate: 23061980 Non primary hits 3766864 Unmapped reads: 3592527 mapq < mapq_cut (non-unique): 1479918 mapq >= mapq_cut (unique): 34562161 Read-1: 17282805 Read-2: 17279356 Reads map to '+': 17281032 Reads map to '-': 17281129 Non-splice reads: 24233762 Splice reads: 10328399 Reads mapped in proper pairs: 34556372 Proper-paired reads map to different chrom:0