#================================================== #All numbers are READ count #================================================== Total records: 163405650 QC failed: 0 Optical/PCR duplicate: 79692859 Non primary hits 17684012 Unmapped reads: 4230557 mapq < mapq_cut (non-unique): 2880356 mapq >= mapq_cut (unique): 58917866 Read-1: 29460929 Read-2: 29456937 Reads map to '+': 29458878 Reads map to '-': 29458988 Non-splice reads: 42677572 Splice reads: 16240294 Reads mapped in proper pairs: 58910510 Proper-paired reads map to different chrom:0