#================================================== #All numbers are READ count #================================================== Total records: 160423824 QC failed: 0 Optical/PCR duplicate: 80264585 Non primary hits 12781476 Unmapped reads: 11338136 mapq < mapq_cut (non-unique): 2485136 mapq >= mapq_cut (unique): 53554491 Read-1: 26780624 Read-2: 26773867 Reads map to '+': 26777257 Reads map to '-': 26777234 Non-splice reads: 39961634 Splice reads: 13592857 Reads mapped in proper pairs: 53542098 Proper-paired reads map to different chrom:0