#================================================== #All numbers are READ count #================================================== Total records: 84429043 QC failed: 0 Optical/PCR duplicate: 31686034 Non primary hits 4802799 Unmapped reads: 3218298 mapq < mapq_cut (non-unique): 1787718 mapq >= mapq_cut (unique): 42934194 Read-1: 21469508 Read-2: 21464686 Reads map to '+': 21467120 Reads map to '-': 21467074 Non-splice reads: 29964857 Splice reads: 12969337 Reads mapped in proper pairs: 42927296 Proper-paired reads map to different chrom:0