#================================================== #All numbers are READ count #================================================== Total records: 95804205 QC failed: 0 Optical/PCR duplicate: 38647833 Non primary hits 6658491 Unmapped reads: 1796643 mapq < mapq_cut (non-unique): 2149061 mapq >= mapq_cut (unique): 46552177 Read-1: 23277752 Read-2: 23274425 Reads map to '+': 23276068 Reads map to '-': 23276109 Non-splice reads: 33234954 Splice reads: 13317223 Reads mapped in proper pairs: 46544634 Proper-paired reads map to different chrom:0