#================================================== #All numbers are READ count #================================================== Total records: 123307521 QC failed: 0 Optical/PCR duplicate: 58409953 Non primary hits 6748147 Unmapped reads: 8087236 mapq < mapq_cut (non-unique): 2043747 mapq >= mapq_cut (unique): 48018438 Read-1: 24012919 Read-2: 24005519 Reads map to '+': 24009121 Reads map to '-': 24009317 Non-splice reads: 34461800 Splice reads: 13556638 Reads mapped in proper pairs: 48002804 Proper-paired reads map to different chrom:0