#================================================== #All numbers are READ count #================================================== Total records: 105219279 QC failed: 0 Optical/PCR duplicate: 41702367 Non primary hits 6164281 Unmapped reads: 1720638 mapq < mapq_cut (non-unique): 2244605 mapq >= mapq_cut (unique): 53387388 Read-1: 26695026 Read-2: 26692362 Reads map to '+': 26693633 Reads map to '-': 26693755 Non-splice reads: 36858366 Splice reads: 16529022 Reads mapped in proper pairs: 53381838 Proper-paired reads map to different chrom:0