#================================================== #All numbers are READ count #================================================== Total records: 82734338 QC failed: 0 Optical/PCR duplicate: 32508456 Non primary hits 4430676 Unmapped reads: 1287678 mapq < mapq_cut (non-unique): 1685989 mapq >= mapq_cut (unique): 42821539 Read-1: 21412309 Read-2: 21409230 Reads map to '+': 21410740 Reads map to '-': 21410799 Non-splice reads: 29734022 Splice reads: 13087517 Reads mapped in proper pairs: 42816410 Proper-paired reads map to different chrom:0