#================================================== #All numbers are READ count #================================================== Total records: 114739917 QC failed: 0 Optical/PCR duplicate: 59047974 Non primary hits 9394325 Unmapped reads: 2526802 mapq < mapq_cut (non-unique): 2333118 mapq >= mapq_cut (unique): 41437698 Read-1: 20720984 Read-2: 20716714 Reads map to '+': 20718920 Reads map to '-': 20718778 Non-splice reads: 26987773 Splice reads: 14449925 Reads mapped in proper pairs: 41420038 Proper-paired reads map to different chrom:0