#================================================== #All numbers are READ count #================================================== Total records: 101308082 QC failed: 0 Optical/PCR duplicate: 47681475 Non primary hits 6418890 Unmapped reads: 4224585 mapq < mapq_cut (non-unique): 1873988 mapq >= mapq_cut (unique): 41109144 Read-1: 20556866 Read-2: 20552278 Reads map to '+': 20554549 Reads map to '-': 20554595 Non-splice reads: 28749067 Splice reads: 12360077 Reads mapped in proper pairs: 41100390 Proper-paired reads map to different chrom:0