#================================================== #All numbers are READ count #================================================== Total records: 80060812 QC failed: 0 Optical/PCR duplicate: 27184960 Non primary hits 5338500 Unmapped reads: 1949258 mapq < mapq_cut (non-unique): 1983109 mapq >= mapq_cut (unique): 43604985 Read-1: 21803820 Read-2: 21801165 Reads map to '+': 21802500 Reads map to '-': 21802485 Non-splice reads: 30218936 Splice reads: 13386049 Reads mapped in proper pairs: 43599586 Proper-paired reads map to different chrom:0